PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G143100.1.p
Common NameLOC101761991, SETIT_024486mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 88aa    MW: 9885.97 Da    PI: 5.8773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G143100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-071460346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         W+  E + + +a + +G g    W+++++ mg  ++++++++++ +
  Seita.3G143100.1.p 14 EWSRKENKMFEEALAYYGEGtpnLWDKVSSAMGGIKSAEEVRLHYED 60
                        7********************************778*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.876762IPR017877Myb-like domain
SMARTSM007175.3E-51164IPR001005SANT/Myb domain
SuperFamilySSF466897.57E-111370IPR009057Homeodomain-like
PfamPF002492.3E-61461IPR001005SANT/Myb domain
CDDcd001670.003741962No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGSRSSSPN SNSEWSRKEN KMFEEALAYY GEGTPNLWDK VSSAMGGIKS AEEVRLHYED  60
LVDDVKMIES GRVPYPKYKT QGFWTRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-21682277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G143100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9551818e-90EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961187.16e-59protein RADIALIS-like 3
SwissprotQ6NNN06e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLK3ZD531e-57K3ZD53_SETIT; Uncharacterized protein
STRINGSi024486m2e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-22RAD-like 1