PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G182600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 645aa    MW: 69541.8 Da    PI: 4.9953
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G182600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.41.2e-18151439127
                 NAM   9 PtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                         P d+ lv  +L+ k++g+ l+++   +++++diy ++P +L +        k+e  +w+fF++ + k+++++rk+r++   +g+W++    
  Seita.3G182600.1.p  15 PADDGLV-AFLRMKLAGEALPAAAgtHFHDCDIYAADPATLTAgyrpapVRKGEGGSWFFFTHVRPKSSSDSRKKRVVGggAGTWHSERAP 104
                         999***9.9**********66643226**************8556776533445569*******************87755889******* PP

                 NAM  90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                         ++vl+ +g+ vg  + + + ++  ++++e+tdW m e++
  Seita.3G182600.1.p 105 RAVLDGEGNCVGHSQYFSYKRKnGKNSSERTDWYMVEFT 143
                         ********************652677779********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.2357168IPR003441NAC domain
SuperFamilySSF1019411.22E-2215167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MPPPPQPGDP AASTPADDGL VAFLRMKLAG EALPAAAGTH FHDCDIYAAD PATLTAGYRP  60
APVRKGEGGS WFFFTHVRPK SSSDSRKKRV VGGGAGTWHS ERAPRAVLDG EGNCVGHSQY  120
FSYKRKNGKN SSERTDWYMV EFTEGQEGDH ERIHGGEPVL VLCKIYRAHS GSRSSSSSSR  180
SARKRKATEE HADASSAPVK AKRRLFNSSA PTLLPASQEQ VSSRVTMVTS RLESQGEAAM  240
FEQEDCHGEL GDALDQLIFW ASQSNASDYL KLSPNPEASQ EQVSSRVTMA SNTLDGLIFW  300
ASQSKMDSTS DYLKFSPNPD VSASQSKTST TRPSLFMSET EMSQGNIGGT LDDIIFRPEP  360
EPLQGMIGSP ADYLKLPPEP GAAQNMVSTK SPSLFMSESE TTFQGKISSS SDYLRFWSEP  420
EASQGTIDSP SDHLKFNPEP EAAHNMGKIS SSSDYLRFWS EPEASQGTID SPSDHLKFNP  480
EPEAAQNNTN TTPPSLSISE PETTQGKIGS TSDFLRFWPE PEATQKIGGT SDYLKFLPGT  540
EALQKASTTP SQLMFEPEVQ VPQGESETAT FNWGQMTGSC AAPAPSHCYG MTDLDDSYWR  600
GNNNNTVSCC HGVGCFVGAP PTLCSTARIP INPSVCGGPA LWSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G182600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961529.10.0uncharacterized protein LOC101760926 isoform X1
TrEMBLA0A368QG750.0A0A368QG75_SETIT; Uncharacterized protein
STRINGSi038541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612