PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G194200.2.p

Common Name

LOC101770120, SETIT_022720mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YC

Protein Properties

Length: 314aa MW: 33716.5 Da PI: 4.7598

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G194200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56	9.1e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v + Seita.3G194200.2.p 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-23	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	6.64E-19	4	89	IPR009072	Histone-fold
Pfam	PF00808	1.9E-16	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK 60 TVGSSHLKQC IQTYNVYDFL REVVSKVPDT GTSDAIADDK LGKRRKAEED GSEEELKRTR 120 NEAESHTSNG RGRGRGRGRG RRGGRGAWKE VVITHEQFVE NQSSKPAGLK VEIADEVPDA 180 TEAKEATPVS SARASIRNID LNLDPAEEDD EVAVPPEAQP SAPATDPAAA NLGLTAPATS 240 SAAANLGLTT PATSSAATTA GPSVPGLNEG AKLKDLLGGW ELPDMNKMDM DPVQFALSSN 300 HKLDDDEDYD NED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-21	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	RGRGRGRGRG
2	130	140	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G194200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055482	0.0	BT055482.1 Zea mays full-length cDNA clone ZM_BFb0340H19 mRNA, complete cds.
GenBank	JX428513	0.0	JX428513.1 Zea mays subsp. mays clone pUT3111 CA5P10 CCAAT-HAP5 type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961646.1	0.0	dr1-associated corepressor isoform X2
TrEMBL	K3Z850	0.0	K3Z850_SETIT; Uncharacterized protein
STRING	Si022720m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-54	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Seita.3G194200.2.p
Entrez Gene	101770120