PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G202300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 361aa    MW: 40178.1 Da    PI: 10.0161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G202300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18223310196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k++++s+v++  +l lp +f++++  ++ +++ ++lede+g +++  +   +k+ +  l++GW++F+  ++L++gD++vF+l ++++f 
  Seita.3G202300.1.p 223 FVKTMVRSHVSSCFWLGLPTSFCKQNL-PP-TEFRMVLEDEDGVEFDAVY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELAEHDRF- 306
                         89*********************8885.43.5689***************..555544..***********************9887888. PP

                         .EEEE CS
                  B3  92 lvvkv 96 
                          ++ +
  Seita.3G202300.1.p 307 -KIYI 310
                         .5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.69E-23216312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-20217312IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-26221312No hitNo description
PfamPF023621.4E-17223311IPR003340B3 DNA binding domain
SMARTSM010191.6E-21223314IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323223314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVAAVELGSK GRLVDSMSTM WSPSVPRVSS IPSTRSTPVP NSTMEEKNSK SPIPIRFLAP  60
LPRLQRERPR PEGTGRVAAG GDMATKASSA ASGAAYEEQR RKRVLENLKH LEDLGISEMS  120
KSLLQAARLQ KQSKGGVRVS PKARKKFDAT EVRRSSRAKA TVSYKDDYGE LDTFLRRKRR  180
SGGKNSEQGR EYTGRVSSYE QQQRAFRRAE KLQDGLDPNN PSFVKTMVRS HVSSCFWLGL  240
PTSFCKQNLP PTEFRMVLED EDGVEFDAVY IGKRTGLSGG WRGFAMHHNL EDGDSLVFEL  300
AEHDRFKIYI IKAIDDDDVE EDESDDKNAS GGTKEEPAEE DSPAAEPPKG AKRRKLRGRR  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347353PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G202300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402170.0BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700381.20.0B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-131Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A368QIV70.0A0A368QIV7_SETIT; Uncharacterized protein
STRINGSi022916m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]