PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G278000.1.p

Common Name

SETIT_024928mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

M-type_MADS

Protein Properties

Length: 98aa MW: 10845.2 Da PI: 4.1943

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G278000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.6	1.4e-07	4	41	9	46
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 q+ fs R ++++ A+ LS da +a+i fs+tg+ Seita.3G278000.1.p 4 SQTNFSERTETLFSMAKDLSQEFDAHIAIIAFSPTGEP 41 699*********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.521	1	40	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-7	5	43	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-8	5	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MAQSQTNFSE RTETLFSMAK DLSQEFDAHI AIIAFSPTGE PKTSTGKHNW WEVDVEALGA 60 DELPVFVRAL EVLRTDVQHH LDAIILEGED ATLILFC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G278000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980582.1	4e-37	uncharacterized protein LOC101765376
TrEMBL	K3ZED4	4e-65	K3ZED4_SETIT; Uncharacterized protein
STRING	Si024928m	7e-66	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7989	5	12

Link Out ? help Back to Top
Phytozome	Seita.3G278000.1.p