PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G301600.1.p

Common Name

LOC101772943, SETIT_024164mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 17254.4 Da PI: 5.2765

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G301600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.1	2.2e-08	4	44	9	49
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 q++fs R n+++ A+ LS +a vavi fs+tg+ + y Seita.3G301600.1.p 4 SQTSFSERTNTLFSIAKDLSQEFGAHVAVIAFSPTGERKAY 44 69**********************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.629	1	48	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-8	5	41	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-9	5	73	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAQSQTSFSE RTNTLFSIAK DLSQEFGAHV AVIAFSPTGE RKAYGAPTAN SILCNYLPEI 60 HSSSSQALTE IAREATNRVD GMKREVEETV FQAKMERALQ ATAWSKILAA QTSAGKQNCW 120 EVDVEALRAD KFLVFVRALD ALRTDIQRYL DAMESS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G301600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963936.1	1e-113	uncharacterized protein LOC101772943
TrEMBL	K3ZC90	1e-111	K3ZC90_SETIT; Uncharacterized protein
STRING	Si024164m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7989	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-07	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Seita.3G301600.1.p
Entrez Gene	101772943