PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G304700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 237aa    MW: 24833.9 Da    PI: 7.9727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G304700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.74e-136387327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        ++ C++++rtG C++G++CkF+H+p
  Seita.3G304700.1.p 63 EPDCSYYMRTGLCRFGATCKFNHPP 87
                        789********************97 PP
2zf-CCCH28.72.3e-09153173727
                         SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                         +f++r+G+Ck+G++CkF H++
  Seita.3G304700.1.p 153 HFYSRYGICKFGPNCKFDHPM 173
                         59*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9486088IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-66087IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-106387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-66588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-46686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.516145174IPR000571Zinc finger, CCCH-type
SMARTSM003560.0052146173IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-7153173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAAAGAGAGG GGGTGGGEGS SSSPAGVAIG PHHHGSAEEA MWQMTLGGGE SMEHGPFPER  60
IGEPDCSYYM RTGLCRFGAT CKFNHPPNRK LAVAAARMKG EYPYRVGQPE CQAGRQAFCL  120
ISLLSPQKTA LNCGLYMLTT FAFLLLTGRT CLHFYSRYGI CKFGPNCKFD HPMGTLMYGT  180
STSPTGDAPT MHYQLASSPG HSERLLDGGS GRSHRISQSD SQQIPSGNGS TEREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G304700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QT651e-54C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A368QL761e-172A0A368QL76_SETIT; Uncharacterized protein
STRINGPavir.J35669.1.p4e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-41zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]