PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G305900.1.p

Common Name

SETIT_024094mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 558aa MW: 63580.4 Da PI: 9.4398

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G305900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.1	1.4e-18	12	129	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............................tekerrtraetrtgC 62 YneYA ++GF++r+++s++s+ ++e +++++ Cs k++ + ++ t+ +r++++ ++ +C Seita.3G305900.1.p 12 VYNEYAMKLGFNIRVASSRNSNVTKELIRKEWECSHARKPALDGEDdgeentsaststndtatlvgskkraatavlTTATRKRNTIKKLNC 102 6**************************************9999999************************99********* PP FAR1 63 kaklkvkkekdgkwevtkleleHnHela 90 ka++ v ++ +++w+v+ ++ +H+H+++ Seita.3G305900.1.p 103 KAHMAVGLR-NARWRVIVMQPDHTHPMV 129 *****.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-16	12	129	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.52	374	410	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	376	403	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.9E-4	385	412	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MEFDTIQEAR RVYNEYAMKL GFNIRVASSR NSNVTKELIR KEWECSHARK PALDGEDDGE 60 ENTSASTSTN DTATLVGSKK RAATAVLTTA TRKRNTIKKL NCKAHMAVGL RNARWRVIVM 120 QPDHTHPMVK AIGVRKHLRS HRSISWADYE LLKTLHHRNI STPQIMGVLA DFHEGLGNLT 180 FSSKDVSNMR THLRGGLTEE EDFAKEFDYY VNRTETPEEF EMLWARIEDK YHLQENEFFQ 240 SMSGTRRMWA PAYFRKYFFP FTGTTGRSES MNSLFKKVVH PQDSMLQFIT QYDYIMDTRA 300 ERENKERCKG EISDPPLWGR YAFEKQAAAF YTGEVFGKFQ ELLRDSTRYK VEAVESDDQG 360 WSIQIVHPNS TRVPMVTIDK DATSYTCSCN MFDRDGLLCP HILKGFTNRD VEKILEKKMM 420 SLAAEACLGP EKYIVASTGI DTLVQAVRTA RGSQEMQQDE ASNIATGQQS KTLAVMVKNP 480 TRTKSKGRPK EKVERFKSIV AQAKEKAMKK KAKGKKTAQK IPPCSYCFED GHSVQTCAYM 540 AKAEALAKDL KETELKL*

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MEFDTIQEAR RVYNEYAMKL GFNIRVASSR NSNVTKELIR KEWECSHARK PALDGEDDGE  60
ENTSASTSTN DTATLVGSKK RAATAVLTTA TRKRNTIKKL NCKAHMAVGL RNARWRVIVM  120
QPDHTHPMVK AIGVRKHLRS HRSISWADYE LLKTLHHRNI STPQIMGVLA DFHEGLGNLT  180
FSSKDVSNMR THLRGGLTEE EDFAKEFDYY VNRTETPEEF EMLWARIEDK YHLQENEFFQ  240
SMSGTRRMWA PAYFRKYFFP FTGTTGRSES MNSLFKKVVH PQDSMLQFIT QYDYIMDTRA  300
ERENKERCKG EISDPPLWGR YAFEKQAAAF YTGEVFGKFQ ELLRDSTRYK VEAVESDDQG  360
WSIQIVHPNS TRVPMVTIDK DATSYTCSCN MFDRDGLLCP HILKGFTNRD VEKILEKKMM  420
SLAAEACLGP EKYIVASTGI DTLVQAVRTA RGSQEMQQDE ASNIATGQQS KTLAVMVKNP  480
TRTKSKGRPK EKVERFKSIV AQAKEKAMKK KAKGKKTAQK IPPCSYCFED GHSVQTCAYM  540
AKAEALAKDL KETELKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G305900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987128.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A368QKN6	0.0	A0A368QKN6_SETIT; Uncharacterized protein
STRING	Si024094m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-28	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.3G305900.1.p