PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G335400.1.p

Common Name

LOC101769858, SETIT_023541mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 150aa MW: 16621.6 Da PI: 7.7886

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G335400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.7	8e-16	23	82	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++ + ++a++++e+ Seita.3G335400.1.p 23 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVEQEN 82 58*****************************************************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-12	17	73	No hit	No description
SMART	SM00338	1.2E-17	20	84	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	22	85	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-12	23	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.28E-10	24	74	No hit	No description
CDD	cd14702	3.66E-16	25	76	No hit	No description
PROSITE pattern	PS00036	0	27	42	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006971	Biological Process	hypotonic response
GO:0009267	Biological Process	cellular response to starvation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000693	Biological Process	positive regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MSSSSLSPAG RTSGSDGDSA DTHRREKRRL SNRESARRSR LRKQQHLDEL VQEVARLQAE 60 NARVAARAAD IASQYARVEQ ENTVLRARAA ELGDRLRSVN EVLRVVEEFS GVAMDIQEEM 120 PADDPLLRPW QLPYPAAAMP IGGAHMLQY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	42	RRSRLRK
2	36	43	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00419	DAP	Transfer from AT3G62420	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G335400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034289	1e-177	BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBank	BT088408	1e-177	BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBank	EU964736	1e-177	EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962768.1	1e-103	ocs element-binding factor 1
Swissprot	P24068	6e-95	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	K3ZAH0	1e-102	K3ZAH0_SETIT; Uncharacterized protein
STRING	Si023541m	1e-102	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	2e-29	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Seita.3G335400.1.p
Entrez Gene	101769858

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]