PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G338800.1.p
Common NameSETIT_022020mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 469aa    MW: 51067.4 Da    PI: 5.1049
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G338800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC80.22.7e-2525121497
               NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                          fw k+   ie  +df ++++P++rikk++  ++   m++ ++P +l+kace+f+ e+++r+w+ a++n+r+ +  sdi++a+++t+ +df
  Seita.3G338800.1.p  25 DFWRKRqieIEAIQDFGDRAIPMTRIKKVICDEKGKMMMTFDTPSFLTKACEIFVQEIAFRAWMCANSNQRSIILDSDITEAIASTQSYDF 115
                         69988767799********************999999****************************************************** PP

               NF-YC  92 lvdivp 97 
                         l d   
  Seita.3G338800.1.p 116 LNDFLN 121
                         **9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.85E-1631131IPR009072Histone-fold
PfamPF008082.3E-845107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.8E-1846120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDHRIEIRSS PRTPMPLSQQ EMIDDFWRKR QIEIEAIQDF GDRAIPMTRI KKVICDEKGK  60
MMMTFDTPSF LTKACEIFVQ EIAFRAWMCA NSNQRSIILD SDITEAIAST QSYDFLNDFL  120
NAHQDEHHSC PYPKPTKKRH DRLLTNLPSS SCHLPPHQNQ LPQFSHKFTR YPPLVHIPPL  180
VVPQTNGPRV PLSLASLPHE ASSVIATTGT PAPIVSGIIP PTNYMANGLG SFGNTINNIA  240
ASSGVMNHLK ELPRALANIP NTYCYMNMVA SASVYGVDSA SSSNVAAQDS GIAFHCPYIP  300
QITLQLPSPL QTTISSAHTT TNITIENYIH VGVAATKSTI HASSKTNGNG DIDPNAIGVG  360
DDQHQHEEEA NTSLEVNGVH GSLNAQAVAA TSIGNDINWD EFDMLDDSLL SVVGKDIVMD  420
EEPGPLPNTA SNDDLLLASN MSDLEGFSHE PYLLDDIISS AGTSKRCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G338800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QLM60.0A0A368QLM6_SETIT; Uncharacterized protein
STRINGSi022020m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-19nuclear factor Y, subunit C4