PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G355000.1.p
Common NameSETIT_024861mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 293aa    MW: 30506.7 Da    PI: 5.993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G355000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.6e-1798146355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y GVr++k +g Wv+eIr+p+    +  r++lg+f tae+Aa+a++ a+++ +g
  Seita.3G355000.1.p  98 YCGVRRRK-WGVWVSEIREPR----KaSRIWLGTFPTAEMAARAHDVAALAVRG 146
                         77***998.**********94....36**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-1296146IPR001471AP2/ERF domain
CDDcd000182.77E-2596154No hitNo description
Gene3DG3DSA:3.30.730.103.8E-3097155IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2097155IPR016177DNA-binding domain
SMARTSM003804.3E-3297160IPR001471AP2/ERF domain
PROSITE profilePS5103222.74897154IPR001471AP2/ERF domain
PRINTSPR003671.5E-898109IPR001471AP2/ERF domain
PRINTSPR003671.5E-8120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDADGLHATT TMSSSSSITS TQRQSKKKPK PKHVKSHKAA AAAAGDHCQA REREATDGAM  60
MCAEDEERNS GGASSGEHAA SASCRSRKRG AAGRHPSYCG VRRRKWGVWV SEIREPRKAS  120
RIWLGTFPTA EMAARAHDVA ALAVRGRAAR LNFPQLAHQL PRPASASPAD IQAAAAMAAA  180
AGGVDAAALV GECEDDVVSP SAAETSSPPS SSSSSSCAAA GPPAGSRDDD DNAMTAALFD  240
LPDDLLLDLR DGLWSSEYFW AAAPVAAGLE YHDGEEDVHG LYSEPLLWAA DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1889155673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186104RKRGAAGRHPSYCGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G355000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964110.10.0ethylene-responsive transcription factor ERF039
TrEMBLA0A368QM720.0A0A368QM72_SETIT; Uncharacterized protein
STRINGSi024861m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5875022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-21ERF family protein