PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G365300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 517aa    MW: 57199 Da    PI: 7.217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G365300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064292314123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cgk  ++ ++L rH r+H
  Seita.3G365300.1.p 292 YQCKVCGKLLRSGYSLGRHTRLH 314
                         9********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.12244IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-62245IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0582251IPR007087Zinc finger, C2H2
PROSITE patternPS0002802446IPR007087Zinc finger, C2H2
SuperFamilySSF576673.03E-9290314No hitNo description
PfamPF139129.7E-6291316IPR007087Zinc finger, C2H2
SMARTSM003550.15292314IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949292319IPR007087Zinc finger, C2H2
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
SuperFamilySSF576673.03E-9360387No hitNo description
SMARTSM003550.15365387IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-8365389IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058365392IPR007087Zinc finger, C2H2
PROSITE patternPS000280367387IPR007087Zinc finger, C2H2
PfamPF139125.9E-7447471IPR007087Zinc finger, C2H2
SMARTSM003550.17448470IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182448475IPR007087Zinc finger, C2H2
PROSITE patternPS000280450470IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDIDEPRTPK LADMLSRGSH KHLCKVCTKN FRSGRALGGH MSCHRHAGMQ QRSTPCPPAI  60
VVDVPVSLLG PSDEKPSLPC LETQWWHLSQ EFSTNQSLRG NMRMHSEKKV MAKPNEEPAG  120
LMEASANANG DHGHHEMLFS PVKRKRSKRG MPALDSEMCA ADALLMLAKY SDKSYAYEDC  180
CGGDNNDNIS TPNLLKEVNL NAFDQLVQSD EFTNSTRLKS DKNSAYEGFY EHTEQESSLN  240
LAADVPRKMV LLNVFDHGLV DGNAEFMKPE ADISVEEVKS GNLAAAVNIK RYQCKVCGKL  300
LRSGYSLGRH TRLHCEKENS LNLVADVPKE VLLDVDDEFM KPGADNSVEE LKSGDLSAAV  360
NIKSYQCKVC GKLLRSGRAL GGHMTSHLQR GQENTSNLVA DVPKTEMLLN VFDHGLDVDA  420
DFMKPGADIS VEELQSSDLS ASVNIKRHHC KVCGKVLGSG HALGGHMRLH YVRKCNLHQG  480
VADCTNSTMM EEQMQKLELK SPIFYRRRPR SHWSGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G365300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681048.10.0uncharacterized protein LOC111256778
TrEMBLA0A368QMS20.0A0A368QMS2_SETIT; Uncharacterized protein
STRINGPavir.Ca02555.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.18e-11C2H2 family protein