PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G370000.1.p
Common NameLOC101773071, SETIT_022287mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 391aa    MW: 40963.4 Da    PI: 8.5156
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G370000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.7e-32239294156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Seita.3G370000.1.p 239 KARRCWSPELHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 294
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.28E-17236297IPR009057Homeodomain-like
PROSITE profilePS5129413.312236296IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-29236297IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-26239294IPR006447Myb domain, plants
PfamPF002495.6E-7241292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMARKEDHHH HHLRALAARA VTDSLRAAAS RATDADRAAR FEDCVRNLEA EKAKMEVFRR  60
ELPISVHLVA DVIEWLKEEL AQHRRLAPSP APAPELFAPA PTSPAPAAKR KAAAPEGGAV  120
KAEADANDKR SWMSSAQLWS CGGGHDGSSS STATNNGAAA AAKPAHKVSD AFMPLSGLPT  180
LARSPDDAAE KPTAVPVPEL TLSSPAIDAA CPAAPSATSS AVTDGGGAAQ RQHQQQQRKA  240
RRCWSPELHR RFVAALQRLG GAQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRASS  300
SDGGGGDHHA ASAAAAGLWS SAAPEQQYTT SQHSTSQSGS PQGPLQLTVS SRAMSATAGD  360
SCDGDEAEGG RSESYSFGMQ QQHGTKAASS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G370000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616581e-52AY661658.1 Sorghum bicolor clone BAC 796all, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963026.10.0transcription factor HHO3
TrEMBLK3Z6W80.0K3Z6W8_SETIT; Uncharacterized protein
STRINGSi022287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-34G2-like family protein