PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G372100.1.p
Common NameSETIT_024343mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 235aa    MW: 27272.5 Da    PI: 9.9404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G372100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-10401141794
                         E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3  17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         v+ k++a +h   ++e++t+tl ++s+ ++W   ++  +++g+++l+ G ++F ++ngL+egD+ +F++ ++ +++  +v
  Seita.3G372100.1.p  40 VIDKDYAVKHL--PHEDQTITLCHPSNiKKWHASFK-VNTDGTCILSLGSSDFFRDNGLQEGDISIFEVLKSqTRT--TV 114
                         89999999994..346679*****9999*******4.566667*************************77643444..43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-1324110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-1325116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-725117No hitNo description
SMARTSM010192.6E-427120IPR003340B3 DNA binding domain
PfamPF023624.5E-840116IPR003340B3 DNA binding domain
PROSITE profilePS508638.79740120IPR003340B3 DNA binding domain
SMARTSM010191.1136233IPR003340B3 DNA binding domain
PfamPF023622.4E-7159227IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-9170230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-8183229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.755200234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRKYFTRCKE CIVHHYWKHM DDWGKSFLNV MIGDYVVRPV IDKDYAVKHL PHEDQTITLC  60
HPSNIKKWHA SFKVNTDGTC ILSLGSSDFF RDNGLQEGDI SIFEVLKSQT RTTVAVHLPK  120
RYRLPEGVTS SESSVYEDTK PQYAVSHKTR LDNQQKRKVV KKVKAIQSET PILVFVKGLS  180
GDYKMLITFQ HFARGKMLGG RWNQFVKDNM LRQGDICLFE LLKEKWLTMH GRFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G372100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3ZCR51e-175K3ZCR5_SETIT; Uncharacterized protein
STRINGSi024343m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179