PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G372600.1.p
Common NameSETIT_024423mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 364aa    MW: 41780.3 Da    PI: 8.1674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G372600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1838126198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk +     +++g +++p kfa++++g+ +++    l+ +sg++W + +  +k++++ +l +GW++Fvka++L+e+D ++F+  g+s+f 
  Seita.3G372600.1.p  38 FFKLM--TGDFSKG-ISIPDKFAKNFKGQITRG--FELKAPSGETWHMSV--EKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 120
                         56655..4445555.9*******9998886776..7788***********..*******************************9999999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                           v vf+
  Seita.3G372600.1.p 121 -QVLVFE 126
                         .888776 PP
2B346.94.8e-15256354199
                         EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                         f++vl++++v ++ + l++p +fa++h ++  +  +++l+   + ++W v + y+ + +++       +Fv++n+L+egD++vF+l++  +
  Seita.3G372600.1.p 256 FVTVLMKKHVQRRnNALIIPSRFAADHLEE--RAHDIILRRpNRKEKWLVSYYYSHYMRSF-RNLAFFKFVHDNKLREGDICVFELMKGkR 343
                         78999999999886889**********544..5568***9945559******777777664.4567899****************997769 PP

                         EE..EEEEE-S CS
                  B3  89 efelvvkvfrk 99 
                         + +++++v+r+
  Seita.3G372600.1.p 344 RVTMTIHVIRN 354
                         99999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-2231130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59235128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-2237130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-1837125No hitNo description
PfamPF023621.9E-1638126IPR003340B3 DNA binding domain
SMARTSM010191.8E-1338128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18249353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-15250353IPR015300DNA-binding pseudobarrel domain
CDDcd100176.01E-14254353No hitNo description
PfamPF023625.2E-13256354IPR003340B3 DNA binding domain
SMARTSM010199.4E-8256355IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039257355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQQENGQASM VVEKGCESCR KWQEHYYWEH MDVTKIRFFK LMTGDFSKGI SIPDKFAKNF  60
KGQITRGFEL KAPSGETWHM SVEKRGDELF LMSGWEDFVK AHELQENDLL LFTCCGNSSF  120
QVLVFEASGC EKASSLFGSR ISPDMCKHVN DIAGQHGEQH FSVSDSEDTT TPSQHIGSYQ  180
NASSSKKSCG KTKPSESEYP NTSNFVAKHP AIGEEDSDDE YAKSNCYYSM FANRLRDDIK  240
EEIIGLASIR LNNPAFVTVL MKKHVQRRNN ALIIPSRFAA DHLEERAHDI ILRRPNRKEK  300
WLVSYYYSHY MRSFRNLAFF KFVHDNKLRE GDICVFELMK GKRRVTMTIH VIRNANGRFI  360
LVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G372600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963041.10.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-129Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A368QMT00.0A0A368QMT0_SETIT; Uncharacterized protein
STRINGSi024423m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-32B3 family protein