PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G376900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 324aa    MW: 34396.9 Da    PI: 6.9536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G376900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-14149196355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +ahn  E+rRR +i ++f +L++l+P +      K +  ++L ++++Y+ksLq
  Seita.3G376900.1.p 149 EAHNLTEKRRRCKISEKFKTLQQLVPGC-----DKSNQLSTLDQTIQYMKSLQ 196
                         69*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-17144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.605146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-18149203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-15149200No hitNo description
PfamPF000103.8E-12149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMMNNSQGSD PAYYYSVDPG HNSGCGNGGG VAEGFLDMFG DHHSSGDLFD LVWQGGPGAS  60
SGMELQPSHL PSSPPPAVVL PPSEDEMASW LYPIVQGDEL VFTAGQDDHP GDFAGHVASV  120
DDQHAAPVKE VADHKKAAGG ARTKSHHAEA HNLTEKRRRC KISEKFKTLQ QLVPGCDKSN  180
QLSTLDQTIQ YMKSLQQQIQ AMSFGCGVNP TAVYTVAAPP YLPPAAAAAP AGFLVRGHVR  240
PGVVLAPPPA MVPFGPLLPL VHHHQHPAAM ASAPMLYPAA AAPNNICKGS SSRVRENNST  300
SRNKMMELVC MRRSSRWEAT PVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G376900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QN000.0A0A368QN00_SETIT; Uncharacterized protein
STRINGSi024311m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-19phytochrome interacting factor 3