PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G379700.1.p
Common NameSETIT_022331mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 384aa    MW: 41545.1 Da    PI: 6.7222
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G379700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-15190243457
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          k+ rr+ +NRe+ArrsR+RK++ +  Le  v  L++eN +L k+l  ++++++
  Seita.3G379700.1.p 190 TKKMRRMLSNRESARRSRKRKQEHLTDLESQVSRLTSENASLLKRLADMTQKYK 243
                         5999***********************************999966666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-16187251IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.565189241IPR004827Basic-leucine zipper domain
PfamPF001704.8E-13190243IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-13191243No hitNo description
SuperFamilySSF579592.49E-12191242No hitNo description
CDDcd147021.64E-18192242No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF124982.1E-26258363IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MRIKTKGHFR KSPTVSPLAH WRPSNAAGIN AASPPVSTIA QVAPSSLPSP SGPHRGTRCE  60
KESDFPPSMA GGCAEDDVVE VSCGGGGRDP GAYAAVLKRR LDLYCAAVAK SMEAKSQESS  120
LGYPNTQASN TSQLISQASF DDDGDGADLV TNSNIIDYDD FRGKPANSGT SKEQSDDDGD  180
LEENTDPTNT KKMRRMLSNR ESARRSRKRK QEHLTDLESQ VSRLTSENAS LLKRLADMTQ  240
KYKDATLDNR NLIVDVETMR RKVNIAEEAV RRLTGTTLLL PTTSDKPASS MRLTSCASDA  300
ASASVAIEDS MEHFLRAPFQ DSQTKLDLQN AEIPLASGEI GTKLAPMRRV ASLENLQKRM  360
HGDSLHSETA STFSSDPESF AHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RRSRKRK
2203210RRSRKRKQ
3205210SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G379700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963102.20.0light-inducible protein CPRF2 isoform X2
TrEMBLK3Z7110.0K3Z711_SETIT; Uncharacterized protein
STRINGSi022331m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-26basic leucine zipper 9