PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G379700.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 364aa    MW: 41037 Da    PI: 10.816
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G379700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.12.5e-15170223457
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          k+ rr+ +NRe+ArrsR+RK++ +  Le  v  L++eN +L k+l  ++++++
  Seita.3G379700.2.p 170 TKKMRRMLSNRESARRSRKRKQEHLTDLESQVSRLTSENASLLKRLADMTQKYK 223
                         5999***********************************999966666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-16167231IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.565169221IPR004827Basic-leucine zipper domain
PfamPF001704.4E-13170223IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-13171223No hitNo description
SuperFamilySSF579592.25E-12171222No hitNo description
CDDcd147021.11E-15172222No hitNo description
PROSITE patternPS000360174189IPR004827Basic-leucine zipper domain
PfamPF124982.0E-26238343IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLSLPRLVQN ENQNQRAFPE KSHSVATRPL APQQRCRYKR GLPSGVHHCS GCSQLPSFPL  60
RPSPRYEVRE RKRLSSEHGG RLRRRRRGGG ELRRGRPRPR RLRGGAQEEA RPVLRRRRQI  120
HDDGDGADLV TNSNIIDYDD FRGKPANSGT SKEQSDDDGD LEENTDPTNT KKMRRMLSNR  180
ESARRSRKRK QEHLTDLESQ VSRLTSENAS LLKRLADMTQ KYKDATLDNR NLIVDVETMR  240
RKVNIAEEAV RRLTGTTLLL PTTSDKPASS MRLTSCASDA ASASVAIEDS MEHFLRAPFQ  300
DSQTKLDLQN AEIPLASGEI GTKLAPMRRV ASLENLQKRM HGDSLHSETA STFSSDPESF  360
AHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17086RKRLSSEHGGRLRRRRR
285101RRGGGELRRGRPRPRRL
3183189RRSRKRK
4183190RRSRKRKQ
5185190SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G379700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660454.10.0bZIP transcription factor RISBZ2 isoform X1
TrEMBLA0A368QN270.0A0A368QN27_SETIT; Uncharacterized protein
STRINGSi022331m1e-170(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-26basic leucine zipper 9