PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G384500.1.p

Common Name

SETIT_024964mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

BES1

Protein Properties

Length: 109aa MW: 11531 Da PI: 10.6571

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G384500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	84.6	2.6e-26	51	107	7	63
DUF822 7 ptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvve 63 + ErEnn +RE +RR + ++iy+ LRa+Gny lpk ++nneVlkA creAGwv++ Seita.3G384500.1.p 51 NAPVERENNHHRECHRRLVPSRIYTVLRAKGNYTLPKNCNNNEVLKAVCREAGWVID 107 3456**************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.3E-23	52	107	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MNGGGGMVAV RMGGAGGSNG SGGGDHDKGK GIVFGNEYGS ARGRAKGRAR NAPVERENNH 60 HRECHRRLVP SRIYTVLRAK GNYTLPKNCN NNEVLKAVCR EAGWVIDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-12	69	107	392	430	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-12	69	107	392	430	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-12	69	107	392	430	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-12	69	107	392	430	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G384500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3ZEG9	2e-71	K3ZEG9_SETIT; Uncharacterized protein
STRING	Si024964m	3e-72	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	8e-16	BES1 family protein

Link Out ? help Back to Top
Phytozome	Seita.3G384500.1.p