PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G390100.1.p
Common NameSETIT_024641mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 260aa    MW: 28379 Da    PI: 10.3976
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G390100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA60.93.8e-19141190858
           CBFB_NFYA   8 aKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         aKQ+++I   R +Rak e+ ++l  k+rkpyl eSRh hAl R+RgsgGrF
  Seita.3G390100.1.p 141 AKQFEGIFHWRRARAKTERVNRL-VKARKPYLQESRHLHALCRARGSGGRF 190
                         8**********************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-20132193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115224.273133193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-12136158IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-17141190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-12167190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAFRNRARGG GRRRGMVRVD GPRAGQAAEG AWHAAADQEG GGACAGHLPA AAIWLLRRRR  60
RKHPASLVDE EEGGRRLEAA SRPASMVVSS SLAIVCFACK GEKGSEHSAT VALQPPFAVY  120
NGRFGPGLGQ SMVCADTTDH AKQFEGIFHW RRARAKTERV NRLVKARKPY LQESRHLHAL  180
CRARGSGGRF LNTKKIQQSD LGNLSSVSSL SGSEVSSIYD HEDVDHYHSF HHLYIPFTHS  240
RASWTWPAAS EGCCDLLRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G390100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.11e-50nuclear transcription factor Y subunit A-10
RefseqXP_022680516.11e-50nuclear transcription factor Y subunit A-10
TrEMBLK3ZDK30.0K3ZDK3_SETIT; Uncharacterized protein
STRINGSi024641m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-20nuclear factor Y, subunit A8