PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G391900.1.p
Common NameLOC101773896, SETIT_022811mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 298aa    MW: 31053.8 Da    PI: 7.0994
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G391900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-34381591109
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesss 79 
                         aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a +ai+el+++            ss++a  + +++++
  Seita.3G391900.1.p  38 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAGAAIDELPSLdcsfalpaagaaSSPPA--AGDDAEV 126
                         6899*************************************************************99999998766522222..2222222 PP

                 TCP  80 ssasnsssg.....kaaksaa.kskksqksaasaln 109
                         s++++s+s+     +   + a + + s ++a++a n
  Seita.3G391900.1.p 127 STSETSKSSvlslaN---APAdNASASAHQANHAYN 159
                         222222222343221...222122222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3340152IPR005333Transcription factor, TCP
PROSITE profilePS5136932.3984199IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEEVGMERTA CKRPRAALDG GSANAAAAWR TCRVARAAAG GKDRHSKVVT ARGLRDRRVR  60
LSVPTAIQFY DIQDRLGVDQ PSKAIEWLIR AAGAAIDELP SLDCSFALPA AGAASSPPAA  120
GDDAEVSTSE TSKSSVLSLA NAPADNASAS AHQANHAYNG NAGGSGGAFA ELLHCSNDSK  180
PMQQQQQPTL AYYAAQLPSS HAAPAMPFET MPQLAFLQEQ PHPAVGFDRG TLQSNAAIAA  240
PLWPPSQQAC FLQRFAAAPA DAAGLPFFLG GGAAAPPVTV NAEPRLQLWD FKQERKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2346100155Putative transcription factor PCF6
5zkt_B3e-2346100155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G391900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.10.0transcription factor PCF8
SwissprotA2ZMR93e-97PCF8_ORYSI; Transcription factor PCF8
TrEMBLK3Z8E10.0K3Z8E1_SETIT; Uncharacterized protein
STRINGSi022811m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.27e-32TCP family protein