PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G029200.1.p
Common NameLOC101782816, SETIT_007019mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 293aa    MW: 30526.2 Da    PI: 9.1767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19115169256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Seita.4G029200.1.p 115 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 169
                         678899***********************************************98 PP
2HD-ZIP_I/II1253.6e-40115205192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +l
  Seita.4G029200.1.p 115 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-AL 204
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Seita.4G029200.1.p 205 K 205
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-1896169IPR009057Homeodomain-like
PROSITE profilePS5007116.536111171IPR001356Homeobox domain
SMARTSM003891.5E-16113175IPR001356Homeobox domain
SuperFamilySSF466894.6E-18113180IPR009057Homeodomain-like
PfamPF000469.1E-17115169IPR001356Homeobox domain
CDDcd000861.35E-15115172No hitNo description
PRINTSPR000314.0E-5142151IPR000047Helix-turn-helix motif
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PRINTSPR000314.0E-5151167IPR000047Helix-turn-helix motif
SMARTSM003405.7E-21171214IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9171205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MIPQAASLDL GLSLGLGLTS QGSLSSSITT AGSSPWAAAL SSVVAAQQHQ PHHAAAAAAV  60
DPDSGAMRAS TSPDSAAALS SGTSGGGDNK RELERTGSGG VRSDEEDGAD GAGGRKKLRL  120
SKDQAAVLEE CFKTHSTLNP KQKVALANRL GLRPRQVEVW FQNRRARTKL KQTEVDCEYL  180
KRWCERLADE NKRLEKELAD LRALKAAPST AAQPASSPAA TLTMCPSCRR VAANHQQQCH  240
PKSNASPAPA AATAVAGSVV PSHCQFFPAA VDRTGQSTWN AAAAPLVTRE LF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932881e-139FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964497.10.0homeobox-leucine zipper protein HOX2
SwissprotQ5VPE37e-92HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U867e-92HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLK3XYL10.0K3XYL1_SETIT; Uncharacterized protein
STRINGSi007019m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-46homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]