PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G039400.1.p
Common NameLOC101770159, SETIT_008323mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 227aa    MW: 23979.4 Da    PI: 7.2367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G039400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-182574255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GV+++ + grWv+eIr+p++   r r++lg+f+t+e+Aa+a +aa  +l+g
  Seita.4G039400.1.p 25 RYRGVWRR-RLGRWVSEIRVPNS---RDRIWLGSFDTPEKAARAFDAALVCLRG 74
                        7****755.59*********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.8772584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-252584IPR001471AP2/ERF domain
SMARTSM003805.7E-282590IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-172584IPR016177DNA-binding domain
PfamPF008471.3E-92574IPR001471AP2/ERF domain
PRINTSPR003676.4E-72637IPR001471AP2/ERF domain
CDDcd000184.23E-203584No hitNo description
PRINTSPR003676.4E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPATGSSSST PARDRNEPSP SGQRRYRGVW RRRLGRWVSE IRVPNSRDRI WLGSFDTPEK  60
AARAFDAALV CLRGPGAVHG LNFPGSPPDV GRRTSDSREV CAAAVWHANH ATTPANDDGA  120
PMERVAAASH HASQAAGAAA APEHDRGGVP VESVAAPAPL QLSAQRLDWS QLVANPPPLY  180
SPTVTGSHTY LPISSTAAPP DDLDENDDRP CPGLWSFDSG GSCSRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G039400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966648.11e-162ethylene-responsive transcription factor ERF015
TrEMBLK3Y2A11e-160K3Y2A1_SETIT; Uncharacterized protein
STRINGSi008323m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-22ERF family protein