PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G039700.1.p
Common NameSETIT_008104mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 204aa    MW: 21683.2 Da    PI: 4.317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G039700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-191464256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                        +ykGVr +k +grWv+eIr p     +   r++lg+++t+e+Aa+a +aa ++l+g+
  Seita.4G039700.1.p 14 KYKGVRLRK-WGRWVSEIRLP-----HsrERIWLGSYDTPEKAARAFDAAYLCLRGP 64
                        8******99.**********7.....335*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-251373IPR001471AP2/ERF domain
CDDcd000181.13E-251473No hitNo description
SMARTSM003801.6E-281479IPR001471AP2/ERF domain
PfamPF008475.5E-111463IPR001471AP2/ERF domain
PROSITE profilePS5103221.7731473IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-191473IPR016177DNA-binding domain
PRINTSPR003677.0E-91526IPR001471AP2/ERF domain
PRINTSPR003677.0E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQPSAAAVAS GERKYKGVRL RKWGRWVSEI RLPHSRERIW LGSYDTPEKA ARAFDAAYLC  60
LRGPAGVDGL NFPGSPPDVG RTSDPNEVYA AAVSQADPAA AAALWDNAAE PPSEMLAHDD  120
GAPAPALSPP LQVSVPSFDW SELLADLPPL FSPAEVMSRA YLLPVSPAAA DVTMEENDSW  180
SPCPGLWSFD SSGDSPITDH VDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13173172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G039700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126144e-41CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966650.11e-143ethylene-responsive transcription factor ERF018
SwissprotQ9S7L52e-31ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A368QQK21e-142A0A368QQK2_SETIT; Uncharacterized protein
STRINGSi008104m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.17e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]