PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G060700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 196aa    MW: 19974.3 Da    PI: 10.6401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-1752101255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Seita.4G060700.1.p  52 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 101
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-3151110IPR001471AP2/ERF domain
PROSITE profilePS5103222.97252109IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2252111IPR016177DNA-binding domain
CDDcd000182.83E-2552111No hitNo description
SMARTSM003802.8E-3752115IPR001471AP2/ERF domain
PfamPF008471.6E-1052101IPR001471AP2/ERF domain
PRINTSPR003675.3E-125364IPR001471AP2/ERF domain
PRINTSPR003675.3E-1291111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEREATAFYP PPQPAPAAPA AGPAAATVAA GTGAAGGGVG GHARGGGVGG RQYRGVRMRK  60
WGKWVAEIRE PNKRSRIWLG SYSTAVAAAR AYDTAVFYLR GRSARLNFPD QLDGAAVADR  120
PEGHKDGGGG GAGLTAAAIR KKAAEVGARV DALHCGVGLG GGAPPPPPLS THSHRRRAKN  180
PDLNREPTPD TSDDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1650113367ATERF1
3gcc_A7e-1650113367ATERF1
5wx9_A1e-1544113676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G060700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964749.11e-135ethylene-responsive transcription factor ERF008
SwissprotO221745e-46ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A368QRA61e-134A0A368QRA6_SETIT; Uncharacterized protein
STRINGPavir.J34361.1.p3e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-30DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]