PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G094000.1.p

Common Name

SETIT_008305mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 471aa MW: 51039.6 Da PI: 6.3718

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G094000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.1	1.7e-19	5	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 +Gf F P+de v++yL +++ g l++++ i e d +++ Pw+L k ++ ++e +f ++ + + +g r++r + g W+ + + + Seita.4G094000.1.p 5 LVGFVFAPEDEVAVDYYLLPRILGWLLRIDDLILEDDPLSALPWELL-KRNGCKEEAFFLAEGQARCGKGARQKRtCAGGGWWEGQKT-CA 93 68*************************999**********7.4455677999999999*******4445566653322.22 PP NAM 92 vlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k ++e+ + kk L f+ g +t Wvmhey + Seita.4G094000.1.p 94 KGDKlripgggGREAAWRKKALNFHGGGGGGKGSTGWVMHEYVV 137 2222334677777889*****887777779******76 PP
2	NAM	22.4	3.4e-07	169	272	20	128
NAM 20 kkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.WkatgkdkevlskkgelvglkktLvfy 109 ++v g++l+l+ i + + +++ Pw+L ++++ +++ +fF++ + k+++g+ ++r+ + g+ W+ g+ + v +k ++ g ++ + Seita.4G094000.1.p 169 LPRVLGQPLPLDGPILDDNPLSAPPWELL-EHNGCKDDAFFFTPGQAKSSKGSWQKRTCAGGRfWN--GERTCVDGEKLRVSGHSDSSA-K 255 567889999998889999********6.555667799****************777664398..444444443333344433332.2 PP NAM 110 kgrapkgektdWvmheyrl 128 + +k +t Wv hey++ Seita.4G094000.1.p 256 E-GGEK-GSTGWVRHEYAI 272 2.2233.379999999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-24	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	24.494	4	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-12	6	136	IPR003441	NAC domain
PROSITE profile	PS51005	10.126	150	291	IPR003441	NAC domain
SuperFamily	SSF101941	7.98E-11	168	288	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MADLLVGFVF APEDEVAVDY YLLPRILGWL LRIDDLILED DPLSALPWEL LKRNGCKEEA 60 FFLAEGQARC GKGARQKRTC AGGGWWEGQK TCAKGDKLRI PGGGGREAAW RKKALNFHGG 120 GGGGKGSTGW VMHEYVVTAP KDLARSPLRL YHIRRNSYGR RQSGAMELLP RVLGQPLPLD 180 GPILDDNPLS APPWELLEHN GCKDDAFFFT PGQAKSSKGS WQKRTCAGGR FWNGERTCVD 240 GEKLRVSGHS DSSAKEGGEK GSTGWVRHEY AITASDHLAG SQLRLYCIWF SDHVKKRKRG 300 EAADSAVDEA APAAARRRVA ADASLNMATS QPNCSSSMVM VDMGHANDNW IADADQHAAP 360 VTIMVNQDLT ADITTDTSWD LGLLDNFDIN EFIRSLGHSP STHPCVLPGL MDPGAYLDSD 420 ATGSSLLCQT APPYNGVNLV TPSAPAMQCG CMEPAYSFFF TMPNQSYAAC *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MADLLVGFVF APEDEVAVDY YLLPRILGWL LRIDDLILED DPLSALPWEL LKRNGCKEEA  60
FFLAEGQARC GKGARQKRTC AGGGWWEGQK TCAKGDKLRI PGGGGREAAW RKKALNFHGG  120
GGGGKGSTGW VMHEYVVTAP KDLARSPLRL YHIRRNSYGR RQSGAMELLP RVLGQPLPLD  180
GPILDDNPLS APPWELLEHN GCKDDAFFFT PGQAKSSKGS WQKRTCAGGR FWNGERTCVD  240
GEKLRVSGHS DSSAKEGGEK GSTGWVRHEY AITASDHLAG SQLRLYCIWF SDHVKKRKRG  300
EAADSAVDEA APAAARRRVA ADASLNMATS QPNCSSSMVM VDMGHANDNW IADADQHAAP  360
VTIMVNQDLT ADITTDTSWD LGLLDNFDIN EFIRSLGHSP STHPCVLPGL MDPGAYLDSD  420
ATGSSLLCQT APPYNGVNLV TPSAPAMQCG CMEPAYSFFF TMPNQSYAAC *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G094000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813463.1	0.0	uncharacterized protein LOC112890817
TrEMBL	A0A368QSE5	0.0	A0A368QSE5_SETIT; Uncharacterized protein
STRING	Si008305m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02230.1	1e-08	NAC domain containing protein 4

Link Out ? help Back to Top
Phytozome	Seita.4G094000.1.p