PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G125300.1.p
Common NameSETIT_007865mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 190aa    MW: 20200.8 Da    PI: 6.1194
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G125300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB112.52.4e-3518109596
               NF-YB   5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                         ++ +P a v+rim+k+ P n+ki+ dake v++c ++f +fvt+ a++ c+r+kr t++gddl+ a+ +lGf++yv pl++yl++yre+eg
  Seita.4G125300.1.p  18 EHKIPRATVARIMRKATPPNSKIGADAKEAVDQCLVKFAAFVTQVAAEECRRDKRTTVTGDDLILAFKNLGFDNYVGPLTLYLRRYREIEG 108
                         6789**************************************************************************************9 PP

               NF-YB  96 e 96 
                         +
  Seita.4G125300.1.p 109 N 109
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-3111119IPR009072Histone-fold
SuperFamilySSF471135.41E-2618110IPR009072Histone-fold
PfamPF008087.3E-172083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-64866No hitNo description
PRINTSPR006151.1E-66785No hitNo description
PRINTSPR006151.1E-686104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDNQPKNHQD GATEAPEEHK IPRATVARIM RKATPPNSKI GADAKEAVDQ CLVKFAAFVT  60
QVAAEECRRD KRTTVTGDDL ILAFKNLGFD NYVGPLTLYL RRYREIEGNM PRARHSTMRS  120
QGAPPAPVAL TVEAAAAPSS GLTLQLGPPS VPDVTELGLH ADVYAVWRGA GPAPAAGTSQ  180
APSCADEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A7e-2721105993NF-YB
4awl_B6e-27211051094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-27211051094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G125300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966907.11e-119nuclear transcription factor Y subunit B-1
TrEMBLK3Y1031e-137K3Y103_SETIT; Uncharacterized protein
STRINGSi007865m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-35nuclear factor Y, subunit B3