PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G132400.1.p

Common Name

SETIT_007995mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 297aa MW: 31486.3 Da PI: 5.6074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G132400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	237	258	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk F++ +L H+++H Seita.4G132400.1.p 237 ECPECGKFFKNDKSLFGHLQSH 258 6******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.18	236	263	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	238	258	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MSKGSFLCSL VLLQVCIVQL SLISSQLTGA QVGDNPLCQD PIQRARLMSS HGRDDFNGHN 60 ADLIFDGELI QLQSPRDVAT SPKQRRPYTR RDSPQGSAAL IAGCRIQAKE RRIEPLAHTM 120 EHTHGERGPL RLLARLFGGS KTTGLGKEAC EADGGAPPMS PMRGDACELG WNPPVLPVRG 180 DANEVVDTGD EYASNDGGVA AVVGGEAAVE EEEGLLHPDG EDSCGTKDSS GIGGDVECPE 240 CGKFFKNDKS LFGHLQSHPN RGYKGLGCDM AGDGNAVKIK RKVHSDGPRA VKGEYE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G132400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3Y1D1	0.0	K3Y1D1_SETIT; Uncharacterized protein
STRING	Si007995m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13916	20	28

Link Out ? help Back to Top
Phytozome	Seita.4G132400.1.p