PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G157600.1.p
Common NameSETIT_008184mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 235aa    MW: 26505.7 Da    PI: 8.6648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G157600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-09138198447
                         S-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                         W +e+d++lv +  +  ++            Wk Ia + +      k+Rt+ qck++w+k 
  Seita.4G157600.1.p 138 WNQEDDLRLVSCWLKNSNDpisgngkkschFWKDIADEYNkhapegKNRTAMQCKEHWNKT 198
                         ***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-6134204IPR009057Homeodomain-like
PROSITE profilePS500907.097138199IPR017877Myb-like domain
PfamPF002496.4E-6138197IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGHRAGHPPA RLEERERRRE AERCLRLFST MNFRPHHYPQ NYLSPHVHPN FHDHYPQNVN  60
PFLGPSYQSL SPTPASYHGG PFSRNIRQYL PGGVGGFVAN GPASPVGSMA FLLSSGGSKE  120
WSYASEDEAK KKGGRIIWNQ EDDLRLVSCW LKNSNDPISG NGKKSCHFWK DIADEYNKHA  180
PEGKNRTAMQ CKEHWNKTIP HINKFHGVYH DICSTIVGLL FDCQWHDCAG LSSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G157600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3Y1W51e-176K3Y1W5_SETIT; Uncharacterized protein
STRINGSi008184m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP449610