PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G160200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 233aa    MW: 25941.9 Da    PI: 10.9805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G160200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.1e-214184245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        rienk +rqvtfskR++g+lKK +E S LC+a++ viifs++++
  Seita.4G160200.1.p 41 RIENKERRQVTFSKRKAGLLKKQSEFSLLCGAQAVVIIFSKKQE 84
                        8***************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-213291IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.4743292IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-183286IPR002100Transcription factor, MADS-box
CDDcd001201.96E-223386No hitNo description
PRINTSPR004048.3E-153454IPR002100Transcription factor, MADS-box
PfamPF003193.6E-204186IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-155469IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-156990IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAHVADVIFS FAQTVIAPKD PAYSKAEGKK TKGKQVIEIR RIENKERRQV TFSKRKAGLL  60
KKQSEFSLLC GAQAVVIIFS KKQEPHPQQG DNEAGKGGKP SGGGGNLFAM GTPSVDHVLR  120
RVDPLPGDEF LPTLEHVDAA AERAVVESMR RRRRRMSAIG AKVLKAVPAG RERFWWEADV  180
QALGEAELLE FARALQRLRD YARRRPAYKP EHSSFEFAPG PRKKVRPKFA VF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104GGKPSGGGG
2149154RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G160200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.11e-84agamous-like MADS-box protein AGL62
TrEMBLA0A368QVA51e-167A0A368QVA5_SETIT; Uncharacterized protein
STRINGPavir.J38547.1.p5e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-11AGAMOUS-like 62