PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G179900.1.p
Common NameLOC101756487
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 357aa    MW: 37607.5 Da    PI: 8.3992
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G179900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822209.87.4e-65121602148
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasasp 90 
                         g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+++ +g+sas sp
  Seita.4G179900.1.p  12 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPTaaERHDPIGRSASPSP 102
                         789************************************************************************9999************ PP

              DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148
                         +ss+q        +sp++sy++sp+sssfps+ s+++i+l  +        +sl+p+l++ls++ss
  Seita.4G179900.1.p 103 CSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnfiggvegSSLIPWLKNLSSSSS 160
                         *****........9************************9998899*****9*********998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.6E-7012156IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTSGAGGGGG LGGTRVPTWR ERENNRRRER RRRAIAAKIF AGLRAYGNYN LPKHCDNNEV  60
LKALCNEAGW TVEPDGTTYR KGCKPTAAER HDPIGRSASP SPCSSYQPSP RASYNPSPAS  120
SSFPSSGSSS HITLGGNNFI GGVEGSSLIP WLKNLSSSSS IASSSKFPQL HHLYFNGGSI  180
SAPVTPPSSS PTRTPRIKTD WENPSVQPPW AGCGSNYASL PNSQPPSPGH QVAPDPTWLS  240
GFRISSAGPS SPTYSLVAPN PFGIFKETVA STSRMCTPGQ SGTCSPVMGG VPIHHDVQMV  300
DGTPDDFAFG SSSNGNNQSP GLVKAWEGER IHEECASDEH ELELTLGSSK TRADPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-241589372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-241589372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-241589372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-241589372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G179900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965584.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A368QVV10.0A0A368QVV1_SETIT; Uncharacterized protein
STRINGSi006761m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.14e-61BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]