PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G198300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 541aa    MW: 58981.2 Da    PI: 7.1394
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G198300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.74e-21201250151
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                         k+r++W+ eLH++F+ea++q+ G +kA+Pk++le+m+v+gLt++ ++SHLQ
  Seita.4G198300.1.p 201 KQRIQWSGELHHKFLEAIDQI-GLDKAVPKKLLEVMNVDGLTRDCIASHLQ 250
                         79*******************.***************************** PP
2Response_reg35.36.2e-131294178
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEE CS
        Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireeepklpiivvt 78
                        vl vdD+++ + llr+ l+  +y++v+++++ + al++l+e++     +Dl++ Di m + +dG++ll++i  e  ++p+i v 
  Seita.4G198300.1.p 12 VLAVDDNRAGLLLLRRQLKFCNYNKVTTVTNTTTALDMLRERKgrddqFDLVVSDIFMVDdIDGFKLLEHISLEM-DIPVICVV 94
                        799************************************999999999*********9999**********7655.67776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-178143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.9E-219170No hitNo description
SMARTSM004483.7E-910138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.4511142IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-1012129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.10E-813137No hitNo description
SuperFamilySSF466899.32E-14198251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-20199250IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-20201252IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDVDKFPEGL QVLAVDDNRA GLLLLRRQLK FCNYNKVTTV TNTTTALDML RERKGRDDQF  60
DLVVSDIFMV DDIDGFKLLE HISLEMDIPV ICVVELLLNF VFLLCIKKNW EFMVKGAKYR  120
ACDYLLKPTC LEQFRNVWMH VNDQMNKISG SNDAAGPKLQ SGDGENSEKD GANHTRKHSK  180
KNKKDGNGAK GDKDGMSTQK KQRIQWSGEL HHKFLEAIDQ IGLDKAVPKK LLEVMNVDGL  240
TRDCIASHLQ VLVNLVSLIE CPCLSFGTRS VQPTKSSGYS SGSSTNVSNI VFMCASISND  300
GSLLGTRMHF PLSPSCTSYA SILRGKMLEA NRGIPFDADN FFEEIAKGEM SAPFSHLPLQ  360
SPEFANQPSV HTQSSSAGQF NQVAPSDHLP LQSPELVNQP SIQIPPSSVG LFNPVAREPH  420
QLAGLLNSSS SWRNGVPPRF PDIGRIAGTF IGPTHTNSIM INQISGLVAS SSRVPTFRNE  480
YQNQMAGLMG TSAPMVGLSE QVAETQFNSG SSASSTVVPI GNSTLGSSSS IRPMVVMGLL  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17197250154ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G198300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305586.11e-153two-component response regulator ORR24
TrEMBLA0A368QXY50.0A0A368QXY5_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5050522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.18e-50response regulator 12