PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G206800.1.p
Common NameSETIT_007882mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 247aa    MW: 26154.5 Da    PI: 10.7553
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G206800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.62e-103482154
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                        ++y+GV  + +  r++A I+  +     +k ++lg++gta eAa a++aa+++  
  Seita.4G206800.1.p 34 TRYRGVQMRGR--RYAATIWNpF----LKKAIRLGSYGTAVEAAYAYDAAARSVL 82
                        68****98775..9*******44....25**********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-53481IPR001471AP2/ERF domain
PROSITE profilePS5103211.9963591IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-143592IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-123591IPR016177DNA-binding domain
SMARTSM003801.4E-103597IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPGPGRVVEL ARQAAAAARA DGRAAREAAV QPATRYRGVQ MRGRRYAATI WNPFLKKAIR  60
LGSYGTAVEA AYAYDAAARS VLGRWARPNF PELSAAPAAR EVIAADLARA RRAAEPARQQ  120
QQAPRRQAPL IRCWVPAPAG AAAQHQERVA PPVFAFRREA APQYMRLHYR PGSAATGGGL  180
YAVAFVPGVP DLNDPVPDTS SSELSSTESG SAPAAPNRRE LPHLPALAVE PDQSMVGDNF  240
TDSSAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G206800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967157.11e-144dehydration-responsive element-binding protein 2D
TrEMBLA0A368QWJ51e-170A0A368QWJ5_SETIT; Uncharacterized protein
STRINGSi007882m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610