PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G235200.1.p
Common NameSETIT_007981mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 431aa    MW: 46113.4 Da    PI: 7.7129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G235200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12244288554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Seita.4G235200.1.p 244 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 288
                         8899********************95.....599************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
PROSITE profilePS5088815.605239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-15241308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15243306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10244288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-5254288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLIDRLGVAV QTAVFMSCDH GEIEVGLSSA PAPPAVANHV QESLLEEFMQ LTPAVPSSSS  60
SSLPSLSIGS PEYSSLIRSM ATTAAAEPSS QERQPLPLHP AVQLPGLLLP VYGHAPFLAP  120
EDEDAAIAEA MLAVISCSAP QPPAPTDVPP SPPWLARHRA QRWSPRRRAP GAFRAYCSAL  180
SPRARPRPGA PGQRMAKTAI ALMLSVHMAM RDRELAAARR QEDAAAGQPP APQQQQHTSS  240
QLHHMISERR RRERLNESFQ TLRALLPPGS KKDKATVLAN TTEYMHKLIA DVADLEKKNR  300
HLEAQIGLPL ETQQAGSDDS SERVQVDVTT GASTSTSTSA AGQAQEVSIR VTVRAECDLP  360
EVVIAILARI KKMGRFAVVT VDARQRSSRH AQVSITLRLT AGSDEADETS LKEAVAKAVE  420
DAVARPPSPP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G235200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616662e-35AK361666.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681563.10.0putative transcription factor bHLH041
TrEMBLA0A368QXJ60.0A0A368QXJ6_SETIT; Uncharacterized protein
STRINGSi007981m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-16bHLH family protein