PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G245400.1.p
Common NameSETIT_007238mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25171.2 Da    PI: 9.8474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G245400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.7e-1894148256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++++L+ rqV vWFqNrRa+ k
  Seita.4G245400.1.p  94 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELARRVNLSARQVEVWFQNRRARTK 148
                         788899***********************************************98 PP
2HD-ZIP_I/II114.18.5e-3794182189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl+keq++lLE++F++++ L++ +K+elar+++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL++e ++L++
  Seita.4G245400.1.p  94 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELARRVNLSARQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLKHELAQLQR 182
                         69************************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1883151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-1889154IPR009057Homeodomain-like
PROSITE profilePS5007117.26590150IPR001356Homeobox domain
SMARTSM003896.8E-1392154IPR001356Homeobox domain
CDDcd000861.44E-1394151No hitNo description
PfamPF000463.8E-1594148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PfamPF021831.4E-9150181IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-15150194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFSARLAMEA EDFGKSWLGL GIGSGGDMKR SHGERRSSAL QFDLLFPQSV KEEAAVGTNA  60
EKGARKRLRI TDDDGRRSHE LSPSDDGGDG AATRKKLRLT KEQSTLLEDT FRAHNILSHA  120
QKHELARRVN LSARQVEVWF QNRRARTKLK QTEVDCEILK RCCESLTGEN QRLKHELAQL  180
QRSSSAASGL YVQFPRGAAA AAGGVCPSCE KVTVTTSGGE TSKSSSSYSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298TRKKLRL
2142150RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G245400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.11e-168homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F62e-66HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX71e-167A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-44homeobox from Arabidopsis thaliana