PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G250400.1.p
Common NameSETIT_008399mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 168aa    MW: 19098.1 Da    PI: 9.6629
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G250400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.3e-06103126226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k + C +f++ G+C  Gd C+  H+
  Seita.4G250400.1.p 103 KAPVCEDFLK-GYCADGDECHKKHS 126
                         6689******.*********97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0231947IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2251948IPR000571Zinc finger, CCCH-type
SMARTSM00356134872IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.8595273IPR000571Zinc finger, CCCH-type
SMARTSM003560.00427499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.86474100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.29E-593126IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5101127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272101128IPR000571Zinc finger, CCCH-type
SMARTSM003564.6128150IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.972129151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLASEKVRWS LHTVRTRLAK KQQYCQFFTR FGECKKSGGK CPYIHDRAKV AICTKFLKGL  60
CSNTSCKLTH KVLPERMPDC SYFLRGLCTN TACPYRHVKV NSKAPVCEDF LKGYCADGDE  120
CHKKHSYVCP VFEATGECPQ ESRCNLHHPK KKNKSKRSRA DTLQNNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C5e-142515042169Cleavage and polyadenylation specificity factor subunit 4
6fbs_C3e-142515041168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C3e-142515041168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G250400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681865.11e-105uncharacterized protein LOC101770428
SwissprotQ3ED783e-83C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A368QXZ11e-121A0A368QXZ1_SETIT; Uncharacterized protein
STRINGSi008399m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]