PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G283600.1.p
Common NameLOC101770156, SETIT_006877mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 329aa    MW: 35665.5 Da    PI: 4.7147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G283600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11163205754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Seita.4G283600.1.p 163 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 205
                         79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.95E-5149210No hitNo description
PROSITE profilePS5088815.269156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16160228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9163205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.75E-4256284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW DCNAMSDFFS PAAACTAAMD CSFQDRHQPP PTVSVLPTFT  60
ASYDQPQPQP HPHPAAPGFD CLSEVYGAAA AFGGNNAADY GAEMGFLDVI EPKAALAEGG  120
LGVCKVEPGL AEGGGAFGAG AAPPAPPASK KKRVEGMPSK NLMAERRRRK RLNDRLSMLR  180
SVVPKISKMD RTSILGDTID YMKELLERIK LLQEEIDEQQ QETPGVLSVF RELNPNEMVA  240
RNTPKFDVER KEGGETRVEI YCAAKPGLLL STVSTLENLG LDIQQCVVSC FNDFGMHASC  300
SEMQRERISA DAIKQELFKN AGYGGGCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150170KKRVEGMPSKNLMAERRRRKR
2164171ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G283600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429110.0BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635380.0EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966488.10.0transcription factor bHLH93 isoform X2
SwissprotQ9LSL12e-68BH093_ARATH; Transcription factor bHLH93
TrEMBLK3XY690.0K3XY69_SETIT; Uncharacterized protein
STRINGSi006877m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-66beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]