PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G286600.1.p
Common NameLOC101754605, SETIT_008297mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 191aa    MW: 20172.8 Da    PI: 9.5434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G286600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0007879101123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+Cp+C++ F      + H+r+H
  Seita.4G286600.1.p  79 YPCPICHRLFDAVKAVHGHQRSH 101
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.86E-778149No hitNo description
PROSITE profilePS501578.97479101IPR007087Zinc finger, C2H2
PfamPF139120.03279103IPR007087Zinc finger, C2H2
SMARTSM003550.5479101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PfamPF139125.4E-8127151IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.198127154IPR007087Zinc finger, C2H2
SMARTSM003551.8127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNGAQVFFYG VAYGQFLAGV GGGPGGDEPN RPWRPKSAHE ADAAPAAALR KKRPAASRNR  60
KKDHPAAAAA AGGEAAGPYP CPICHRLFDA VKAVHGHQRS HPERDWRGMA PPRPLPPVAA  120
DGKQYRYACD RCGAPFETRQ ALGGHRASHS GKMGCFSLSR QQPPAAVPPA AAPMPVFPFD  180
LNEPAPEQEE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G286600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967303.11e-134zinc finger protein ZAT3
TrEMBLK3Y2761e-133K3Y276_SETIT; Uncharacterized protein
STRINGSi008297m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.18e-14C2H2-like zinc finger protein