PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G002200.1.p

Common Name

SETIT_005134mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 182aa MW: 19478.1 Da PI: 9.8918

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G002200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.8	5.5e-31	14	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ +++ ++ r++a+++l++eA++r rdP +G+++ + l+++ + Seita.5G002200.1.p 14 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIIKANATDaaRRRAAETLTWEARWRERDPAEGCYREVACLRRDNAL 104 7*****************************************99887544435******************************** PP DUF260 90 lkaelallkee 100 l+a+ a+l+++ Seita.5G002200.1.p 105 LRADNAALRRQ 115 *99998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.392	13	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-27	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MTGGGNGGGG GGGACAVCKH QRRKCEPNCE LAAYFPAHRM NDFRALHLVF GVANLTKLII 60 KANATDAARR RAAETLTWEA RWRERDPAEG CYREVACLRR DNALLRADNA ALRRQLADHH 120 HLLLCWSSTT NNMAAGGGNG QLVAVRPPPP SHAPAPPPAA AAMRDHPSIS SRDNKSSNPR 180 C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	10	116	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	10	116	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G002200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970523	3e-97	EU970523.1 Zea mays clone 346868 ramosa 2 mRNA, complete cds.
GenBank	EU973222	3e-97	EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967330.1	1e-130	LOB domain-containing protein 15
TrEMBL	A0A368R008	1e-129	A0A368R008_SETIT; Uncharacterized protein
STRING	Si005134m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-15	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Seita.5G002200.1.p