PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G022100.1.p

Common Name

SETIT_005107mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 232aa MW: 25876 Da PI: 5.5327

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G022100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.1e-06	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ +F+++ +++ H+++H Seita.5G022100.1.p 205 YTCQLCNATFTTPQTYQGHMSLH 227 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.66E-5	202	225	No hit	No description
PROSITE profile	PS50157	9.827	205	231	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	205	227	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	8.1E-5	205	224	No hit	No description
PROSITE pattern	PS00028	0	207	227	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDPSSYPTKD KSSDNSIFPL HQALRGNVEA PPPQPYPVFT HVPLTRTVAS SGIIQSPARN 60 EQEIMHSFLT VPLSEFLSVD ERVQVASLEP PSITSLLEGD PTAILQAHLD IAGVLDPGPI 120 FHDPTSFIPK ENEMRKPLGS SSSQCDPYGN MTYAKPNYFD QSPMSSSHFL REEQVPSVVN 180 PSDKSNDYIR AAMRYKFEFN RVQQYTCQLC NATFTTPQTY QGHMSLHKER E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G022100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	9e-54	uncharacterized protein LOC8060818
TrEMBL	K3XT51	1e-171	K3XT51_SETIT; Uncharacterized protein
STRING	Si005107m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9

Link Out ? help Back to Top
Phytozome	Seita.5G022100.1.p