PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G023900.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 202aa MW: 21533.7 Da PI: 6.3656

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G023900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	22.2	3.1e-07	80	103	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kpr+ WtpeLH+ F++a + L G+e Seita.5G023900.1.p 80 KPRVIWTPELHNIFLKAYNAL-GEE 103 79*******************.554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-6	79	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAPEANGGVV NGGSSTICME AERNKKPRKR KKSGSSHSAA ETATSSSLPS AGDGNGGAGQ 60 QRRQLAGEGQ QQQQQLHRGK PRVIWTPELH NIFLKAYNAL GEESSVHEAN MRYEEAEIRM 120 EHLQMAAEGE EGQGRAAERG AAAEMAAKAE EGQVQAAEPR TAAAGSSSPP GSSSIREQYW 180 KIDDITDVSW DFCGIPWRKT G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	KKPRKRK
2	27	31	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G023900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368R0R9	1e-144	A0A368R0R9_SETIT; Uncharacterized protein
STRING	Si004864m	7e-51	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20969	5	6

Link Out ? help Back to Top
Phytozome	Seita.5G023900.1.p