PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G033100.1.p
Common NameLOC101783945, SETIT_004925mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 251aa    MW: 27797.6 Da    PI: 10.109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G033100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.3e-151151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+  r  t+ +R +g++KKA+EL  LC+a+++v++++++
  Seita.5G033100.1.p 11 ITNTLSRRATYKRRCQGLMKKASELAALCGAKACVVVYGES 51
                        899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.778151IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-20182IPR002100Transcription factor, MADS-box
CDDcd002664.29E-25285No hitNo description
PRINTSPR004042.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARKKVNLQL ITNTLSRRAT YKRRCQGLMK KASELAALCG AKACVVVYGE SKAQPEVWPS  60
YQEARRLLIK YRDMPEHQRF KKVENQKDFL GSRVTKLRGM VNKSESENNK RESFDILHER  120
MNGGRPGLFG TSTEELTRLQ KIVSERKSQA KERLLELGAG KGQGAPLEPR VQLLPGSSSQ  180
PQDPNTQQPQ PQHPPNGAVL GTLPSSAFPG SSGGCASPSS TGGDMMQPYS PGCYSEFPWT  240
WEWSTFPPME *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G033100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971529.10.0agamous-like MADS-box protein AGL80
TrEMBLK3XSM50.0K3XSM5_SETIT; Uncharacterized protein
STRINGSi004925m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-24AGAMOUS-like 87