PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G054600.1.p
Common NameLOC101783125, SETIT_001021mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 523aa    MW: 56994.4 Da    PI: 5.9824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G054600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-4991361128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGf F P+d elv +yLk+k++g+k+e  + i+evdiyk+ePwdLp+  ++  e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd
  Seita.5G054600.1.p   9 LPPGFGFYPSDTELVGHYLKRKIHGQKIEH-DLIPEVDIYKHEPWDLPAkcNFPIEDNKWHFFASRDRKYPTGSRSNRATVAGYWKSTGKD 98 
                         79**************************99.99***************6245555999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++  ++++ g+kktLvf++gr p+g++t+W+mhey +
  Seita.5G054600.1.p  99 RAIKL-NKKTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                         *****.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-573159IPR003441NAC domain
PROSITE profilePS5100554.9039159IPR003441NAC domain
PfamPF023654.0E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEALRNMKLP PGFGFYPSDT ELVGHYLKRK IHGQKIEHDL IPEVDIYKHE PWDLPAKCNF  60
PIEDNKWHFF ASRDRKYPTG SRSNRATVAG YWKSTGKDRA IKLNKKTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRN DWALDNDNEV GNGNEVGNMN  180
PHPHPQQPNG AATLVVSAVK PEDTADSVIC AEEPNHVATP VGSAQLSNDV AIAGITADTA  240
SPNSSNELEA WLEELLDHSP SFNPIPDTGS ALPSLTEQHA ESSNPGSVVP KIGPDHASPM  300
NDGTDATDYL FPEDLPEDLY SMLYPGNDDF SNSILVEPAG HAATNQTYCL MGGSPFALPN  360
NSEEGIPKDG LQLDQENNNP NLSNGNSDTG IIIRGHRATA SSANISPGFG RIKMQVGINK  420
MVSSNSESIN QTMKFADNSG RRLDLTTSVE CQKKHANDAT SVKQSDATKP IEGHGNQGYL  480
RGIRNGFRCS SAGFNVHILF AIFLIGVAAA VALHYHRSGA SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-44716213172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G054600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967788.10.0NAC domain-containing protein 74
SwissprotQ7GCL71e-173NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLK3XGK10.0K3XGK1_SETIT; Uncharacterized protein
STRINGSi001021m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.15e-59NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]