PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G061200.1.p
Common NameSETIT_004174mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 260aa    MW: 27160.1 Da    PI: 6.9364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G061200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.2e-13192242455
                 AP2   4 kGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +G++ ++ +g+W A+I    e +    k ++lg+f+t+eeAa+a++ a+ +l+g
  Seita.5G061200.1.p 192 RGISSYR-DGKWQARIGRIGEsR--DtKDIYLGTFDTEEEAAEAYDIAAIELRG 242
                         8998787.8******99953323..36*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.898190250IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16191252IPR016177DNA-binding domain
PfamPF008471.5E-7192242IPR001471AP2/ERF domain
SMARTSM003801.6E-21192256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-15192250IPR001471AP2/ERF domain
CDDcd000183.97E-19192252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MATVQPQSPA GPAPYSPQEG RHGDAPNPPA ASGEPPAAAG PGGGGGEIAA LDKQLAVGGG  60
GGGEERKMGG GASAGAGGGR KLVAEAMHKY AAPRSSRFHG VTSGAASTRR TSETKPARSR  120
AASARASTVC TLPTSTLSSS SLQNLLNVST IVVYMRWNQL ISDYEKEIEI IKTMSQDEFV  180
AYIRRQSSCF SRGISSYRDG KWQARIGRIG ESRDTKDIYL GTFDTEEEAA EAYDIAAIEL  240
RGVHAVTNFD ISNYCEDGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G061200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355297e-62BT035529.1 Zea mays full-length cDNA clone ZM_BFb0068F10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.11e-107AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A368R1R50.0A0A368R1R5_SETIT; Uncharacterized protein
STRINGSi004174m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.14e-23AINTEGUMENTA-like 5