PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G062000.1.p

Common Name

LOC101778808, SETIT_005179mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 407aa MW: 42522.6 Da PI: 4.8821

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G062000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	98.6	5.6e-31	85	184	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 lfqrlw++e e+++L+G++df+a++g+ +++ d+ fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g ++f+++h+ i Seita.5G062000.1.p 85 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGAI 175 79**********************99877778*********************************998899********** PP DUF573 89 felskkiWg 97 +++++ iW+ Seita.5G062000.1.p 176 YDVARHIWR 184 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.7E-27	86	183	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MADDHHPLAA AASSSAGDDD EGTDTDASNS DLANHRDPPP LTDATSAPPT PPAAAASAPE 60 PTGAVPPPPP PQPQSAGAAE DSRRLFQRLW TDEEELLILR GFLDFTARRG TTFASHQYDT 120 GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCAARVAA QGAAFAFRSA HEGAIYDVAR 180 HIWRPAFKRG EGAAAGDASD EDDINPAAAA AAAALPNATE DGGGGSASAP TPRGRGGRRV 240 RRRTAQELEA PALPATSALV LNDVVQEPLA VPVENLTPAF APPNPVQAPI VSPMAATPSP 300 MTATAGGAAE EVVRTILSPL LREFISSVAV AGQAGLGLGL GMGFGGIGGF DILGLGFGAA 360 GPNPAMPGDE KWRQQQILEL EVYLKRIELV REQVTAALQE LRSSEG*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MADDHHPLAA AASSSAGDDD EGTDTDASNS DLANHRDPPP LTDATSAPPT PPAAAASAPE  60
PTGAVPPPPP PQPQSAGAAE DSRRLFQRLW TDEEELLILR GFLDFTARRG TTFASHQYDT  120
GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCAARVAA QGAAFAFRSA HEGAIYDVAR  180
HIWRPAFKRG EGAAAGDASD EDDINPAAAA AAAALPNATE DGGGGSASAP TPRGRGGRRV  240
RRRTAQELEA PALPATSALV LNDVVQEPLA VPVENLTPAF APPNPVQAPI VSPMAATPSP  300
MTATAGGAAE EVVRTILSPL LREFISSVAV AGQAGLGLGL GMGFGGIGGF DILGLGFGAA  360
GPNPAMPGDE KWRQQQILEL EVYLKRIELV REQVTAALQE LRSSEG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G062000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065406	1e-166	BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBank	JX428457	1e-166	JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967868.1	0.0	probable transcription factor At3g04930
TrEMBL	K3XTC3	0.0	K3XTC3_SETIT; Uncharacterized protein
STRING	Si005179m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-27	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Seita.5G062000.1.p
Entrez Gene	101778808