PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G105400.1.p
Common NameSETIT_004029mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 177aa    MW: 19110.4 Da    PI: 5.235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G105400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-1275113345
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAaka 45 
                         y GV +++ +grW+AeIrdp     +   r +lg+f+ta++A + 
  Seita.5G105400.1.p  75 YIGVQRRP-WGRWAAEIRDP-----HyaVRKWLGTFDTAKDATRT 113
                         88**9999.**********7.....448**********9999775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-1774127IPR001471AP2/ERF domain
SMARTSM003801.1E-974139IPR001471AP2/ERF domain
PROSITE profilePS5103215.90974117IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1275116IPR016177DNA-binding domain
CDDcd000187.25E-1675115No hitNo description
PfamPF008473.3E-575113IPR001471AP2/ERF domain
PRINTSPR003673.2E-77586IPR001471AP2/ERF domain
PRINTSPR003673.2E-797113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSGLCCQTKG ACTSFRTLQG SPHVLRKSIP NIKAPAACAY ATCGVDGCAG CGCELLTAAG  60
TRSSSDSDDE GEYEYIGVQR RPWGRWAAEI RDPHYAVRKW LGTFDTAKDA TRTYNITDSL  120
HETCGANASS SMDVALAVAA SAEQHGTRPV PKEQDIWDRL NEFMMMDDGS FWSPML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G105400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.13e-49ethylene-responsive transcription factor ERF112
TrEMBLK3XQ491e-129K3XQ49_SETIT; Uncharacterized protein
STRINGSi004029m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-16ERF family protein