PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G114500.1.p
Common NameLOC101774631, SETIT_004188mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27843.7 Da    PI: 8.4029
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G114500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.52e-141151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i+n+s r vt  kR + ++KK +EL +LC+++++v+ +++ 
  Seita.5G114500.1.p 11 ISNNSTRRVTHKKRCQSLMKKTSELTTLCGVKACVVAYGEG 51
                        99************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.465150IPR002100Transcription factor, MADS-box
CDDcd002661.65E-25283No hitNo description
PRINTSPR004041.9E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-20394IPR002100Transcription factor, MADS-box
PfamPF003195.7E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARKKVNLQW ISNNSTRRVT HKKRCQSLMK KTSELTTLCG VKACVVAYGE GQAQPEVWPS  60
PSEARRVLKK FKAMPEIGRF KKMQSQEDFL QGRISKLRDQ VCKLDLENQE HETSRLLHES  120
MDGRRPGLAG TDIEELTNLR QMVETKMARV KELLQEQVVR HGDFPKHPGS SSSSHQLQAS  180
YTEMMQQGWP INLAPAQGEE LGDVVCNAFA STSKDCAGPS GNGGDMTQPY NPGCCSGFPW  240
GQDIFSPME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G114500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971693.10.0agamous-like MADS-box protein AGL80
TrEMBLK3XQK20.0K3XQK2_SETIT; Uncharacterized protein
STRINGSi004188m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-27M-type_MADS family protein