PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G136300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 245aa MW: 24557.1 Da PI: 9.3585

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G136300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.4e-38	49	105	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s ntkfCyynny+lsqPr+fC+aCrryWt+GGalrnvPvGgg+rk Seita.5G136300.1.p 49 PEGLPCPRCESVNTKFCYYNNYNLSQPRHFCRACRRYWTRGGALRNVPVGGGTRKAT 105 57899*************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.994	52	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	52	104	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-20	52	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVSCAASSPS SAADMEAGQA ADGGALAVVA SVAAATGGRP GVAGGGREPE GLPCPRCESV 60 NTKFCYYNNY NLSQPRHFCR ACRRYWTRGG ALRNVPVGGG TRKATPATRR KRTAGGTPPA 120 PAPAPLVAAL PPLTMSGPHG ALLRQYGGLP FPAPALASPL AAVDPDRRLL DLGGSFSSLI 180 AAAPPLDVGA HFSAGFLVGG LAPALAHSPA AAAALPPPPP PPQQVPQALP EGLIWSMGWP 240 DLSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G136300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061950	6e-87	BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds.
GenBank	KJ727013	6e-87	KJ727013.1 Zea mays clone pUT3994 C2C2-DOF transcription factor (DOF7) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701403.1	1e-160	dof zinc finger protein DOF1.7
Swissprot	O82155	5e-35	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A368R4E1	1e-168	A0A368R4E1_SETIT; Uncharacterized protein
STRING	Si002728m	6e-99	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-26	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Seita.5G136300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]