PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G148300.1.p

Common Name

LOC101770717, SETIT_002311mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 315aa MW: 34131 Da PI: 6.878

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G148300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.5e-11	181	226	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ Seita.5G148300.1.p 181 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVA 226 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.6E-14	177	241	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.76	179	235	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-10	181	230	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.7E-14	181	235	No hit	No description
SuperFamily	SSF57959	1.69E-11	181	235	No hit	No description
CDD	cd14703	2.83E-24	182	232	No hit	No description
PROSITE pattern	PS00036	0	184	199	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAQLPPKIPT MAPAWPEFGG GHHHHAHHHH QRSPSVGTFL AAPMPPLPPP QQQHQQPSWV 60 DEFLDFSAAK RGAHRRSVSD SVAFLEPGPD DGNAGVGAHD FDRLDDDQLL SMFSDDMPPP 120 PSQQQAAPAP APVASSSSPS DHNSINDEKT DRGETEEAQS KCHGDDAAPG QPASAAAVDP 180 KRVKRILANR QSAQRSRVRK LQYISELERS VTSLQTEVSA LSPRVAFLDH QRSLLTLGNS 240 HLKQRITALA QDKIFKDAHQ EALKKEIERL RQIYHQQSLK KAESPPAPDA APIRSDKDLI 300 ASEGTAAPAP CPPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G148300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269\|PubMed:18065552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061266	0.0	BT061266.1 Zea mays full-length cDNA clone ZM_BFb0128B20 mRNA, complete cds.
GenBank	KJ727557	0.0	KJ727557.1 Zea mays clone pUT5417 bZIP transcription factor (bZIP117) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968609.1	0.0	basic leucine zipper 2
Swissprot	Q5QNI5	1e-112	BZP02_ORYSJ; Basic leucine zipper 2
TrEMBL	K3XK88	0.0	K3XK88_SETIT; Uncharacterized protein
STRING	Si002311m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-92	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.5G148300.1.p
Entrez Gene	101770717

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]