PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G158200.1.p

Common Name

LOC105914476, SETIT_003350mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 124aa MW: 13337.7 Da PI: 11.7336

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G158200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.7e-06	55	104	9	55
HHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIksLq 55 r+R++ i+ ++e Lr+l+P + +a++++l+ e L +A YI Lq Seita.5G158200.1.p 55 RRKRVEAIRRKMEALRRLVPACEggdgeRADDGRLE--ELLLHAAGYILRLQ 104 69*******************988999999999999..99999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.88	46	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-8	46	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-7	56	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MAAHACYGGG VAGAAPAAAA ARRLKLGRPS RSSLMKARKL RKGGGKCRPR SAASRRKRVE 60 AIRRKMEALR RLVPACEGGD GERADDGRLE ELLLHAAGYI LRLQMQVRVM QVMVHALNNP 120 PED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G158200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701703.1	3e-81	uncharacterized protein LOC105914476
TrEMBL	K3XN77	7e-80	K3XN77_SETIT; Uncharacterized protein
STRING	Si003350m	1e-80	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26

Link Out ? help Back to Top
Phytozome	Seita.5G158200.1.p
Entrez Gene	105914476